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COV-118: Removed usage of the NiFi Registry

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OLMIS-6858 Remove unnecessary files

Remove jolt spec files and Nifi XML templates, as they are no longer used in Nifi.

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OLMIS-6858 Add heartbeat setting to Postgres connector

So that Kafka is notified and changes are flushed, allowing Postgres to update the WAL's LSN. This will help to avoid storage issues.

OLMIS-6858 Clean up unused Nifi flows

Also, consolidate logging to syslog.

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OLMIS-6858 Add cron container to reporting stack

To be able to refresh materialized views with a cronjob. Configured for every 15 minutes.

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COV-75 - Moving covid-reporting to covid repository

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Merge branch 'OLMIS-6858-data-pump-reporting'

Revert "COV-77 Temporarily print fhir id"

This reverts commit 81c2b87679547c708a692dc1a50c3136f0ab1620.

COV-77 Temporarily print fhir id

Check Superset health check URL

From login to health, which appears to be what was intended.

Add superset patchup version to env file

So that it is set.

OLMIS-6858 Update sample settings and remove local network

Local network settings should only be on the local docker-compose. Add new settings in the sample.

COV-77 Created table with details about generate measure nifi flow executions and updated flow identifiers

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Added v3.9 performance graph.

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Merge branch 'master' of

Added v3.9 release notes.

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Revert "COV-73: Changed registry client URL to HTTPS"

This reverts commit c360851cd67304413845d9458df4dbb92a2de682.

COV-73: Changed registry client URL to HTTPS

COV-73: Changed the domain for the reporting stack

COV-77 Updated nifi flow versions

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COV-64 Restored process-groups files with updated data

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COV-64 Deleted files from process groups

OLMIS-6858 Improve the database definition of the reporting database

For Superset. Also add some helper scripts for local development.

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OLMIS-6858 Get materialized views to work with new Kafka tables

The new tables in the reporting database are being populated by the streaming architecture, now the materialized views should use them.

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OLMIS-6858 Add requisition tables to data pump

Also, define two replication slots, one for reference data and one for requisition. This isn't technically necessary for the current architecture, but it creates a logical separation for the services.

OLMIS-6858 Enable streaming architecture for reporting stack

This is to start the data pump feature for the reporting stack. The components of the streaming architecture are added (Kafka, Connect, etc.) and the first set of connectors (for reference data) are registered. There is one source connector for all reference data tables and one sink connector for most reference data tables. The additional sink connectors are for tables that are not identified by an id field, but rather by a combination of ids.

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COV-64 Updated nifi flows

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COV-63: Used Initialization SQL from Core instead of implementation ones

COV-64: Changed the superset source files from implementations to the core ones

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COV-64: Updated the usage of superset in the Dockerfile